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5-alkyl-6-benzyl-2-(2-oxo-2-phenylethylsulfanyl)pyrimidin-4(3H)-ones, a series of anti-HIV-1 agents of the dihydro-alkoxy-benzyl-oxopyrimidine family with peculiar structure - Activity relationship profile

Nawrozkij M.B., Rotili D., Tarantino D., Botta G., Eremiychuk A.S., Musmuca I., Ragno R., Samuele A., Zanoli S., Armand-Ugón M., Clotet-Codina I., Novakov I.A., Orlinson B.S., Maga G., Esté J.A., Artico M., Mai A., Journal of Medicinal Chemistry, 2008


Abstract:

A series of dihydro-alkylthio-benzyl-oxopyrimidines (S-DABOs) bearing a 2-aryl-2-oxoethylsulfanyl chain at pyrimidine C2, an alkyl group at C5, and a 2,6-dichloro-, 2-chloro-6-fluoro-, and 2,6-difluoro-benzyl substitution at C6 (oxophenethyl-S-DABOs, 6-8) is here described. The new compounds showed low micromolar to low nanomolar (in one case subnanomolar) inhibitory activity against wt HIV-1. Against clinically relevant HIV-1 mutants (K103N, Y181C, and Y188L) as well as in enzyme (wt and K103N, Y1811, and L1001 mutated RTs) assays, compounds carrying an ethyl/iso-propyl group at C5 and a 2,6-dichloro-/2- chloro-6-fluoro-benzyl moiety at C6 were the most potent derivatives, also characterized by low fold resistance ratio. Interestingly, the structure-activity relationship (SAR) data drawn from this DABO series are more related to HEPT than to DABO derivatives. These findings were at least in part rationalized by the description of a fair superimposition between the 6-8 and TNK-651 (a HEPT analogue) binding modes in both WT and Y181C RTs. © 2008 American Chemical Society.


Link to the article:

http://dx.doi.org/10.1021/jm800340w